Description
DAPI (4",6-Diamidino-2-Phenylindole, Dihydrochloride) is a nucleic acid stain that binds to A-T rich regions of DNA along the minor groove. DAPI is predominantly impermeant to live cells, allowing it to be used as a viability dye in unfixed cells to discriminate intact from membrane-compromised cells. Note, however, that high concentrations of the dye may still enter intact cells. Additionally, DAPI may be used to analyze DNA content in fixed cells, or as a nuclear counterstain in imaging or flow cytometry.
When bound to double-stranded DNA, DAPI has an excitation wavelength maximum of 358 nm and an emission maximum of 461 nm. DAPI is also well excited by the violet laser line (eg, 405 nm). Note that DAPI also binds RNA. Under these conditions, DAPI emits maximally at 500 nm, but with less intensity than when bound to double-stranded DNA.
Suggested Companion Products
Stain Buffer (FBS) RUO 500mLCat No: 554656
Stain Buffer (BSA) RUO 500mLCat No: 554657
Annexin V Binding Buffer, 10X concentrate RUO 50mLCat No: 556454
FITC Annexin V RUO 200TestsCat No: 556419
Transcription Factor Buffer Set RUO 100TestsCat No: 562574
Transcription Factor Buffer Set RUO 25TestsCat No: 562725
Retrievagen A (pH 6.0) RUO Cat No: 550524
Purified Mouse Anti-Nkx2.2 74.5A5RUO 0.1mgCat No: 564731
Alexa Fluor® 647 Mouse Anti-PTF1A S25-763RUO 50µgCat No: 564750
Perm Buffer III RUO 125mLCat No: 558050
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Preparation and Storage
Avoid multiple freeze-thaws of product.The product should be kept undiluted at -20°C for long term storage, and it may be kept undiluted at 4°C for short term storage.
Product Notices
- FlowJo is a trademark of Tree Star Inc.
- Alexa Fluor® is a registered trademark of Molecular Probes, Inc., Eugene, OR.
- For fluorochrome spectra and suitable instrument settings, please refer to our Multicolor Flow Cytometry web page at www.bdbiosciences.com/colors.
- Please refer to www.bdbiosciences.com/pharmingen/protocols for technical protocols.
Staining of Live Cells for Viability Analysis by Flow Cytometry
1.Obtain a single cell suspension.
2.Resuspend cells in BD Pharmingen™ Stain Buffer (FBS) (Cat. No. 554656) or 1× Dulbecco"s Phosphate Buffered Saline (DPBS) containing 0.05-0.2 μg/mL DAPI.
a.The optimal concentration of DAPI for viability analysis may vary by cell type. We recommend titrating the reagent for your cell type of interest in early experiments.
b.Additionally, apoptotic cells may stain with variable amounts of DAPI. We recommend co-staining with BD Pharmingen™ FITC Annexin V (Cat. No. 556419) if further analysis of apoptotic cells is desired.
3.Incubate 5 minutes at room temperature. No wash is necessary prior to analysis.
4.Proceed to analysis by flow cytometry.
Staining of Fixed Cells for DNA Content Analysis by Flow Cytometry
1.Obtain a single cell suspension.
2.Treat cells on ice for 30 minutes with 70-80% ice-cold ethanol.
a.Ethanol fixation typically provides the most resolved histograms. However, this reagent has also been successfully used for DNA content analysis with the Transcription Factor Buffer Set (Cat. No. 562574/ 562725) or BD Cytofix™ Fixation Buffer (Cat. No. 554655) and BD Phosflow™ Perm Buffer III (Cat. No. 558050) protocol.
3.Wash cells once with BD Pharmingen™ Stain Buffer (FBS).
4.Dilute DAPI solution to 0.5-1 μg/mL in Stain Buffer (FBS) or 1× DPBS immediately prior to use.
5.Stain cells for 5-15 minutes at a cell density of 1 - 2 x 10^6 cells/mL. No further wash is necessary prior to analysis.
a.The optimal cell density and concentration of DAPI for DNA content analysis may vary by cell type. Assay conditions should be optimized in early experiments for best results.
6.Proceed to analysis by flow cytometry.
Immunofluorescent Staining of Fixed Cells for Nuclear Visualization
1.Fix and permeabilize cells as desired.
2.Dilute DAPI solution to 1 µg/ml in 1× DPBS immediately prior to use.
3.Add DAPI solution to each sample at least 15 minutes before analysis.
4.Proceed to imaging.
Note: This reagent has been developed and certified for the Bioimaging application. However, routine Bioimaging testing is not performed on every lot.
